+ this.min_valid_seqs = minSeq;
+ }
+
+ /**
+ *
+ * @return true if non-standard nucleotides and amino acids should be replaced
+ * or omitted
+ *
+ */
+ public boolean isFilterSymbols()
+ {
+ return filterSymbols;
+ }
+
+ /**
+ *
+ * @return true if service needs sequences all the same length (ie padded with
+ * gaps if necessary)
+ */
+ public boolean isNeedsAlignedSeqs()
+ {
+ return needsAlignedSeqs;