-
- AlignmentAnnotation newAnnot = viewport.getAlignment()
- .updateFromOrCopyAnnotation(ala);
- if (aseq != null)
- {
- aseq.addAlignmentAnnotation(newAnnot);
- newAnnot.adjustForAlignment();
- AlignmentAnnotationUtils.replaceAnnotationOnAlignmentWith(
- newAnnot, newAnnot.label, newAnnot.getCalcId());
- }
- annotations.add(newAnnot);