alnCpy.setDataset(result.getDataset());
for (AlignmentAnnotation annotation : result.getAlignmentAnnotation())
alnCpy.addAnnotation(new AlignmentAnnotation(annotation));
alnCpy.setDataset(result.getDataset());
for (AlignmentAnnotation annotation : result.getAlignmentAnnotation())
alnCpy.addAnnotation(new AlignmentAnnotation(annotation));