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Merge branch 'develop' into features/JAL-4134_use_annotation_row_for_colours_and_groups
[jalview.git]
/
src
/
mc_view
/
PDBChain.java
diff --git
a/src/mc_view/PDBChain.java
b/src/mc_view/PDBChain.java
index
c56a947
..
2970ccf
100755
(executable)
--- a/
src/mc_view/PDBChain.java
+++ b/
src/mc_view/PDBChain.java
@@
-703,7
+703,8
@@
public class PDBChain
dsq.addAlignmentAnnotation(ana);
if (cm != null && cm instanceof MappableContactMatrixI)
{
dsq.addAlignmentAnnotation(ana);
if (cm != null && cm instanceof MappableContactMatrixI)
{
- dsq.addContactListFor(ana, ((MappableContactMatrixI) cm).liftOver(dsq,sqmpping));
+ dsq.addContactListFor(ana, ((MappableContactMatrixI) cm)
+ .liftOver(dsq, sqmpping));
}
}
else
}
}
else
@@
-718,8
+719,8
@@
public class PDBChain
// Useful for debugging mappings - adds annotation for mapped position
float min = -1, max = 0;
Annotation[] an = new Annotation[sq.getEnd() - sq.getStart() + 1];
// Useful for debugging mappings - adds annotation for mapped position
float min = -1, max = 0;
Annotation[] an = new Annotation[sq.getEnd() - sq.getStart() + 1];
- for (int i = sq.getStart(), j = sq.getEnd(),
- k = 0; i <= j; i++, k++)
+ for (int i = sq.getStart(), j = sq
+ .getEnd(), k = 0; i <= j; i++, k++)
{
int prn = mapping.getPDBResNum(k + 1);
{
int prn = mapping.getPDBResNum(k + 1);