-public class Alignment extends vamsas.objects.simple.Object implements java.io.Serializable {
- private java.lang.String gapchar;
- private java.lang.String[] method;
- private vamsas.objects.simple.SequenceSet seqs;
-
- public Alignment() {
+public class Alignment extends vamsas.objects.simple.Object implements
+ java.io.Serializable
+{
+ private java.lang.String gapchar;
+
+ private java.lang.String[] method;
+
+ private vamsas.objects.simple.SequenceSet seqs;
+
+ public Alignment()
+ {
+ }
+
+ public Alignment(java.lang.String gapchar, java.lang.String[] method,
+ vamsas.objects.simple.SequenceSet seqs)
+ {
+ this.gapchar = gapchar;
+ this.method = method;
+ this.seqs = seqs;
+ }
+
+ /**
+ * Gets the gapchar value for this Alignment.
+ *
+ * @return gapchar
+ */
+ public java.lang.String getGapchar()
+ {
+ return gapchar;
+ }
+
+ /**
+ * Sets the gapchar value for this Alignment.
+ *
+ * @param gapchar
+ */
+ public void setGapchar(java.lang.String gapchar)
+ {
+ this.gapchar = gapchar;
+ }
+
+ /**
+ * Gets the method value for this Alignment.
+ *
+ * @return method
+ */
+ public java.lang.String[] getMethod()
+ {
+ return method;
+ }
+
+ /**
+ * Sets the method value for this Alignment.
+ *
+ * @param method
+ */
+ public void setMethod(java.lang.String[] method)
+ {
+ this.method = method;
+ }
+
+ /**
+ * Gets the seqs value for this Alignment.
+ *
+ * @return seqs
+ */
+ public vamsas.objects.simple.SequenceSet getSeqs()
+ {
+ return seqs;
+ }
+
+ /**
+ * Sets the seqs value for this Alignment.
+ *
+ * @param seqs
+ */
+ public void setSeqs(vamsas.objects.simple.SequenceSet seqs)
+ {
+ this.seqs = seqs;
+ }
+
+ private java.lang.Object __equalsCalc = null;
+
+ public synchronized boolean equals(java.lang.Object obj)
+ {
+ if (!(obj instanceof Alignment))
+ return false;
+ Alignment other = (Alignment) obj;
+ if (obj == null)
+ return false;
+ if (this == obj)
+ return true;
+ if (__equalsCalc != null)
+ {
+ return (__equalsCalc == obj);