- */
-
-package vamsas.objects.simple;
-
-public class Alignment extends vamsas.objects.simple.Object implements java.io.Serializable {
- private java.lang.String gapchar;
- private java.lang.String[] method;
- private vamsas.objects.simple.SequenceSet seqs;
-
- public Alignment() {
- }
-
- public Alignment(
- java.lang.String gapchar,
- java.lang.String[] method,
- vamsas.objects.simple.SequenceSet seqs) {
- this.gapchar = gapchar;
- this.method = method;
- this.seqs = seqs;
- }
-
-
+ */\r
+\r
+/*
+* Jalview - A Sequence Alignment Editor and Viewer
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+*
+* This program is free software; you can redistribute it and/or
+* modify it under the terms of the GNU General Public License
+* as published by the Free Software Foundation; either version 2
+* of the License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with this program; if not, write to the Free Software
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+*/\r
+package vamsas.objects.simple;\r
+\r
+public class Alignment extends vamsas.objects.simple.Object\r
+ implements java.io.Serializable {\r
+ private java.lang.String gapchar;\r
+ private java.lang.String[] method;\r
+ private vamsas.objects.simple.SequenceSet seqs;\r
+ private java.lang.Object __equalsCalc = null;\r
+ private boolean __hashCodeCalc = false;\r
+\r
+ public Alignment() {\r
+ }\r
+\r
+ public Alignment(java.lang.String gapchar, java.lang.String[] method,\r
+ vamsas.objects.simple.SequenceSet seqs) {\r
+ this.gapchar = gapchar;\r
+ this.method = method;\r
+ this.seqs = seqs;\r
+ }\r
+\r