+/*
+ VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases.
+ Copyright (C) 2008 Kevin Darty, Alain Denise and Yann Ponty.
+ electronic mail : Yann.Ponty@lri.fr
+ paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France
+
+ This file is part of VARNA version 3.1.
+ VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
+ as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+
+ VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
+ without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+ See the GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along with VARNA version 3.1.
+ If not, see http://www.gnu.org/licenses.
+ */
+package fr.orsay.lri.varna.models.naView;
+
+public class Base {
+ private int mate;
+ private double x, y;
+ private boolean extracted;
+ private Region region = new Region();
+
+ public int getMate() {
+ return mate;
+ }
+
+ public void setMate(int mate) {
+ this.mate = mate;
+ }
+
+ public double getX() {
+ return x;
+ }
+
+ public void setX(double x) {
+ //System.out.println(" Base.setX()");
+ this.x = x;
+ }
+
+ public double getY() {
+ return y;
+ }
+
+ public void setY(double y) {
+ this.y = y;
+ }
+
+ public boolean isExtracted() {
+ return extracted;
+ }
+
+ public void setExtracted(boolean extracted) {
+ this.extracted = extracted;
+ }
+
+ public Region getRegion() {
+ return region;
+ }
+
+ public void setRegion(Region region) {
+ this.region = region;
+ }
+}