- AlignSeq as = new AlignSeq(new Sequence("s1", "PFY"), new Sequence(
- "s2", "RQW"), AlignSeq.PEP);
- int[] expected = new int[] { 0, 0, 1, 1, 2, 2, 21, 21, 22, 22, 23, 24,
+ AlignSeq as = new AlignSeq(new Sequence("s1", "PFY"),
+ new Sequence("s2", "RQW"), AlignSeq.PEP);
+ int[] expected = new int[] { 0, 0, 1, 1, 2, 2, 21, 21, 22, 22, -1, 23,