git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-629 Added --all arg, [*] linkedId and functionality to apply some args to all...
[jalview.git]
/
test
/
jalview
/
analysis
/
AlignmentUtilsTests.java
diff --git
a/test/jalview/analysis/AlignmentUtilsTests.java
b/test/jalview/analysis/AlignmentUtilsTests.java
index
1193c39
..
4baa384
100644
(file)
--- a/
test/jalview/analysis/AlignmentUtilsTests.java
+++ b/
test/jalview/analysis/AlignmentUtilsTests.java
@@
-2630,6
+2630,11
@@
public class AlignmentUtilsTests
assertNotNull(
"No contact matrix recovered after reference annotation transfer",
cl);
assertNotNull(
"No contact matrix recovered after reference annotation transfer",
cl);
+ // semantics of sequence associated contact list is slightly tricky - column 3 in alignment should have data
+ cl = al.getContactListFor(alan, 3);
+ assertNotNull(
+ "Contact matrix should have data for last position in sequence",
+ cl);
ContactMatrixI cm2 = new SeqDistanceContactMatrix(4);
dssq.addContactList(cm2);
ContactMatrixI cm2 = new SeqDistanceContactMatrix(4);
dssq.addContactList(cm2);