- Dna dna = new Dna(av, new int[] { 0, cdna.getWidth() - 1 });
- AlignmentI translated = dna.translateCdna();
+ Iterator<int[]> contigs = cs.getVisContigsIterator(0, cdna.getWidth(),
+ false);
+ Dna dna = new Dna(av, contigs);
+ AlignmentI translated = dna.translateCdna(GeneticCodes.getInstance()
+ .getStandardCodeTable());