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Merge branch 'features/JAL-4071_visibleFeaturesCounter' into features/JAL-3417_sdppre...
[jalview.git]
/
test
/
jalview
/
analysis
/
FinderTest.java
diff --git
a/test/jalview/analysis/FinderTest.java
b/test/jalview/analysis/FinderTest.java
index
1f45f70
..
7e3bd86
100644
(file)
--- a/
test/jalview/analysis/FinderTest.java
+++ b/
test/jalview/analysis/FinderTest.java
@@
-131,11
+131,12
@@
public class FinderTest
* single symbol should find *all* matching symbols
*/
Finder f = new Finder(av);
* single symbol should find *all* matching symbols
*/
Finder f = new Finder(av);
- f.findAll("M", false,false,false);
+ f.findAll("M", false, false, false);
SearchResultsI sr = f.getSearchResults();
SearchResultsI sr = f.getSearchResults();
- assertEquals(sr.getCount(),5);
-
+ assertEquals(sr.getCount(), 5);
+
}
}
+
/**
* Test for (undocumented) find residue by position
*/
/**
* Test for (undocumented) find residue by position
*/
@@
-575,7
+576,7
@@
public class FinderTest
sg.addSequence(al.getSequenceAt(1), false);
sg.addSequence(al.getSequenceAt(2), false);
av.setSelectionGroup(sg);
sg.addSequence(al.getSequenceAt(1), false);
sg.addSequence(al.getSequenceAt(2), false);
av.setSelectionGroup(sg);
-
+
/*
* search for 'e' should match two sequence ids and one residue
*/
/*
* search for 'e' should match two sequence ids and one residue
*/
@@
-641,8
+642,8
@@
public class FinderTest
}
/**
}
/**
- * Test that find does not report hidden positions, but does report matches that
- * span hidden gaps
+ * Test that find does not report hidden positions, but does report matches
+ * that span hidden gaps
*/
@Test(groups = "Functional")
public void testFind_withHiddenColumns()
*/
@Test(groups = "Functional")
public void testFind_withHiddenColumns()
@@
-770,7
+771,7
@@
public class FinderTest
* --bcdEFH
* aa---aMMMMMaaa
*/
* --bcdEFH
* aa---aMMMMMaaa
*/
-
+
/*
* hide columns 2-4 and 6-7
*/
/*
* hide columns 2-4 and 6-7
*/
@@
-778,7
+779,7
@@
public class FinderTest
hc.hideColumns(2, 4);
hc.hideColumns(6, 7);
al.setHiddenColumns(hc);
hc.hideColumns(2, 4);
hc.hideColumns(6, 7);
al.setHiddenColumns(hc);
-
+
/*
* select rows 2-3
*/
/*
* select rows 2-3
*/