+
+ @Test(groups = "Functional")
+ public void testFind_featuresOnly()
+ {
+ Finder f = new Finder(av);
+ // no match when not searching feature descriptions
+ f.findAll("Feature", false, false, false, true);
+ assertEquals(f.getSearchResults().getCount(), 0);
+
+ // no match when case sensitive on feature descriptions
+ f.findAll("feature", true, false, true, true);
+ assertEquals(f.getSearchResults().getCount(), 0);
+
+ // search feature descriptions - all match
+ f.findAll("Feature", false, false, true, true);
+ assertEquals(f.getSearchResults().getCount(), 3);
+
+ List<SequenceI> seqs = f.getSearchResults().getMatchingSubSequences();
+ // assume order is preserved in results
+ assertEquals(al.getSequenceAt(0).getDatasetSequence(),
+ seqs.get(0).getDatasetSequence());
+ assertEquals(seqs.get(0).getStart(), 9);
+ assertEquals(seqs.get(0).getEnd(), 11);
+ assertEquals(al.getSequenceAt(3).getDatasetSequence(),
+ seqs.get(1).getDatasetSequence());
+ assertEquals(seqs.get(1).getStart(), 9);
+ assertEquals(seqs.get(1).getEnd(), 11);
+ assertEquals(al.getSequenceAt(3).getDatasetSequence(),
+ seqs.get(2).getDatasetSequence());
+ assertEquals(seqs.get(2).getStart(), 1);
+ assertEquals(seqs.get(2).getEnd(), 3);
+
+ SequenceI sq = null;
+ // search feature descriptions incrementally
+ // assume same order as before
+ f.findNext("Feature", false, false, true, true);
+ assertEquals(f.getSearchResults().getCount(), 1);
+ sq = f.getSearchResults().getMatchingSubSequences().get(0);
+ assertEquals(sq.getSequenceAsString(),
+ seqs.get(0).getSequenceAsString());
+
+ // ..
+ f.findNext("Feature", false, false, true, true);
+ assertEquals(f.getSearchResults().getCount(), 1);
+ sq = f.getSearchResults().getMatchingSubSequences().get(0);
+ assertEquals(sq.getSequenceAsString(),
+ seqs.get(1).getSequenceAsString());
+
+ // ..
+ f.findNext("Feature", false, false, true, true);
+ assertEquals(f.getSearchResults().getCount(), 1);
+ sq = f.getSearchResults().getMatchingSubSequences().get(0);
+ assertEquals(sq.getSequenceAsString(),
+ seqs.get(2).getSequenceAsString());
+
+ }