seqgroupsString[p].getSequencesInOrder(alignment),
seqgroupsColSel[p].getSequencesInOrder(alignment));
if (seqgroupsString[p].getSequences().contains(s2))
{
seqgroupsString[p].getSequencesInOrder(alignment),
seqgroupsColSel[p].getSequencesInOrder(alignment));
if (seqgroupsString[p].getSequences().contains(s2))
{