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JAL-838 added 'SeqSpace' PID mode, added parameters to findDistances and
[jalview.git]
/
test
/
jalview
/
analysis
/
scoremodels
/
ScoreMatrixTest.java
diff --git
a/test/jalview/analysis/scoremodels/ScoreMatrixTest.java
b/test/jalview/analysis/scoremodels/ScoreMatrixTest.java
index
01de741
..
1076d43
100644
(file)
--- a/
test/jalview/analysis/scoremodels/ScoreMatrixTest.java
+++ b/
test/jalview/analysis/scoremodels/ScoreMatrixTest.java
@@
-171,7
+171,7
@@
public class ScoreMatrixTest
String[] seqs = new String[] { "FKL", "R D", "QIA", "GWC" };
ScoreMatrix sm = ScoreModels.getInstance().getBlosum62();
String[] seqs = new String[] { "FKL", "R D", "QIA", "GWC" };
ScoreMatrix sm = ScoreModels.getInstance().getBlosum62();
- MatrixI pairwise = sm.findSimilarities(seqs);
+ MatrixI pairwise = sm.findSimilarities(seqs, SimilarityParams.Jalview);
/*
* should be NxN where N = number of sequences
/*
* should be NxN where N = number of sequences