- assertTrue(sm instanceof PairwiseDistanceModel);
- assertEquals(sm.getName(), "Identity (SeqSpace)");
- assertEquals(((PairwiseDistanceModel) sm).getScoreModel()
- .getPairwiseScore('R', 'C'), 0f);
- assertEquals(((PairwiseDistanceModel) sm).getScoreModel()
- .getPairwiseScore('R', 'r'), 1f);
+ assertTrue(sm instanceof SimilarityScoreModel);
+ assertTrue(sm instanceof PairwiseScoreModelI);
+ assertFalse(sm instanceof DistanceScoreModel);
+ assertEquals(sm.getName(), "PID");
+ assertEquals(((PairwiseScoreModelI) sm).getPairwiseScore('R', 'C'), 0f);
+ assertEquals(((PairwiseScoreModelI) sm).getPairwiseScore('R', 'r'), 1f);