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[jalview.git]
/
test
/
jalview
/
datamodel
/
AlignedCodonIteratorTest.java
diff --git
a/test/jalview/datamodel/AlignedCodonIteratorTest.java
b/test/jalview/datamodel/AlignedCodonIteratorTest.java
index
3e3a46d
..
d9c7e12
100644
(file)
--- a/
test/jalview/datamodel/AlignedCodonIteratorTest.java
+++ b/
test/jalview/datamodel/AlignedCodonIteratorTest.java
@@
-2,12
+2,14
@@
package jalview.datamodel;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertFalse;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertFalse;
-import org.testng.annotations.Test;
-import org.testng.Assert;
+
import jalview.util.MapList;
import java.util.Iterator;
import jalview.util.MapList;
import java.util.Iterator;
+import org.testng.Assert;
+import org.testng.annotations.Test;
+
/**
* Unit tests for Mapping$AlignedCodonIterator
*
/**
* Unit tests for Mapping$AlignedCodonIterator
*
@@
-19,7
+21,7
@@
public class AlignedCodonIteratorTest
/**
* Test normal case for iterating over aligned codons.
*/
/**
* Test normal case for iterating over aligned codons.
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testNext()
{
SequenceI from = new Sequence("Seq1", "-CgC-C-cCtAG-AtG-Gc");
public void testNext()
{
SequenceI from = new Sequence("Seq1", "-CgC-C-cCtAG-AtG-Gc");
@@
-47,7
+49,7
@@
public class AlignedCodonIteratorTest
/**
* Test weird case where the mapping skips over a peptide.
*/
/**
* Test weird case where the mapping skips over a peptide.
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testNext_unmappedPeptide()
{
SequenceI from = new Sequence("Seq1", "-CgC-C-cCtAG-AtG-Gc");
public void testNext_unmappedPeptide()
{
SequenceI from = new Sequence("Seq1", "-CgC-C-cCtAG-AtG-Gc");
@@
-75,7
+77,7
@@
public class AlignedCodonIteratorTest
/**
* Test for exception thrown for an incomplete codon.
*/
/**
* Test for exception thrown for an incomplete codon.
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testNext_incompleteCodon()
{
SequenceI from = new Sequence("Seq1", "-CgC-C-cCgTt");
public void testNext_incompleteCodon()
{
SequenceI from = new Sequence("Seq1", "-CgC-C-cCgTt");
@@
-104,7
+106,7
@@
public class AlignedCodonIteratorTest
/**
* Test normal case for iterating over aligned codons.
*/
/**
* Test normal case for iterating over aligned codons.
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testAnother()
{
SequenceI from = new Sequence("Seq1", "TGCCATTACCAG-");
public void testAnother()
{
SequenceI from = new Sequence("Seq1", "TGCCATTACCAG-");