git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-1619 refactored cDNA translation; modified codon comparison; tests
[jalview.git]
/
test
/
jalview
/
datamodel
/
AlignmentTest.java
diff --git
a/test/jalview/datamodel/AlignmentTest.java
b/test/jalview/datamodel/AlignmentTest.java
index
2b1fc72
..
8912155
100644
(file)
--- a/
test/jalview/datamodel/AlignmentTest.java
+++ b/
test/jalview/datamodel/AlignmentTest.java
@@
-125,7
+125,7
@@
public class AlignmentTest
* Make mappings between sequences. The 'aligned cDNA' is playing the role
* of what would normally be protein here.
*/
* Make mappings between sequences. The 'aligned cDNA' is playing the role
* of what would normally be protein here.
*/
- AlignedCodonFrame acf = new AlignedCodonFrame(al1.getWidth());
+ AlignedCodonFrame acf = new AlignedCodonFrame();
MapList ml = new MapList(new int[]
{ 1, 12 }, new int[]
{ 1, 12 }, 1, 1);
MapList ml = new MapList(new int[]
{ 1, 12 }, new int[]
{ 1, 12 }, 1, 1);
@@
-171,7
+171,7
@@
public class AlignmentTest
*/
AlignmentI al1 = loadAlignment(CDNA_SEQS_1, "FASTA");
AlignmentI al2 = loadAlignment(AA_SEQS_1, "FASTA");
*/
AlignmentI al1 = loadAlignment(CDNA_SEQS_1, "FASTA");
AlignmentI al2 = loadAlignment(AA_SEQS_1, "FASTA");
- AlignedCodonFrame acf = new AlignedCodonFrame(al2.getWidth());
+ AlignedCodonFrame acf = new AlignedCodonFrame();
MapList ml = new MapList(new int[]
{ 1, 12 }, new int[]
{ 1, 4 }, 3, 1);
MapList ml = new MapList(new int[]
{ 1, 12 }, new int[]
{ 1, 4 }, 3, 1);