+
+ /**
+ * Tests the method that returns 1 / -1 / 0 for strand "+" / "-" / other
+ */
+ @Test(groups = { "Functional" })
+ public void testGetStrand()
+ {
+ SequenceFeature sf = new SequenceFeature("type", "desc", 22, 33, 12.5f,
+ "group");
+ assertEquals(0, sf.getStrand());
+ sf.setValue("STRAND", "+");
+ assertEquals(1, sf.getStrand());
+ sf.setValue("STRAND", "-");
+ assertEquals(-1, sf.getStrand());
+ sf.setValue("STRAND", ".");
+ assertEquals(0, sf.getStrand());
+ }
+
+ /**
+ * Tests for equality, and that equal objects have the same hashCode
+ */
+ @Test(groups = { "Functional" })
+ public void testEqualsAndHashCode()
+ {
+ SequenceFeature sf1 = new SequenceFeature("type", "desc", 22, 33,
+ 12.5f, "group");
+ sf1.setValue("ID", "id");
+ sf1.setValue("Name", "name");
+ sf1.setValue("Parent", "parent");
+ sf1.setStrand("+");
+ sf1.setPhase("1");
+ SequenceFeature sf2 = new SequenceFeature("type", "desc", 22, 33,
+ 12.5f, "group");
+ sf2.setValue("ID", "id");
+ sf2.setValue("Name", "name");
+ sf2.setValue("Parent", "parent");
+ sf2.setStrand("+");
+ sf2.setPhase("1");
+
+ assertFalse(sf1.equals(null));
+ assertTrue(sf1.equals(sf2));
+ assertTrue(sf2.equals(sf1));
+ assertEquals(sf1.hashCode(), sf2.hashCode());
+
+ // changing type breaks equals:
+ sf2.setType("Type");
+ assertFalse(sf1.equals(sf2));
+
+ // changing description breaks equals:
+ sf2.setType("type");
+ sf2.setDescription("Desc");
+ assertFalse(sf1.equals(sf2));
+
+ // changing start position breaks equals:
+ sf2.setDescription("desc");
+ sf2.setBegin(21);
+ assertFalse(sf1.equals(sf2));
+
+ // changing end position breaks equals:
+ sf2.setBegin(22);
+ sf2.setEnd(32);
+ assertFalse(sf1.equals(sf2));
+
+ // changing feature group breaks equals:
+ sf2.setEnd(33);
+ sf2.setFeatureGroup("Group");
+ assertFalse(sf1.equals(sf2));
+
+ // changing ID breaks equals:
+ sf2.setFeatureGroup("group");
+ sf2.setValue("ID", "id2");
+ assertFalse(sf1.equals(sf2));
+
+ // changing Name breaks equals:
+ sf2.setValue("ID", "id");
+ sf2.setValue("Name", "Name");
+ assertFalse(sf1.equals(sf2));
+
+ // changing Parent breaks equals:
+ sf2.setValue("Name", "name");
+ sf1.setValue("Parent", "Parent");
+ assertFalse(sf1.equals(sf2));
+
+ // changing strand breaks equals:
+ sf1.setValue("Parent", "parent");
+ sf2.setStrand("-");
+ assertFalse(sf1.equals(sf2));
+
+ // changing phase breaks equals:
+ sf2.setStrand("+");
+ sf1.setPhase("2");
+ assertFalse(sf1.equals(sf2));
+
+ // restore equality as sanity check:
+ sf1.setPhase("1");
+ assertTrue(sf1.equals(sf2));
+ assertTrue(sf2.equals(sf1));
+ assertEquals(sf1.hashCode(), sf2.hashCode());
+
+ // changing status doesn't change equals:
+ sf1.setStatus("new");
+ assertTrue(sf1.equals(sf2));
+ }