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JAL-3899 Replace prints with logger messages.
[jalview.git]
/
test
/
jalview
/
ext
/
paradise
/
TestAnnotate3D.java
diff --git
a/test/jalview/ext/paradise/TestAnnotate3D.java
b/test/jalview/ext/paradise/TestAnnotate3D.java
index
85fc039
..
7d0916b
100644
(file)
--- a/
test/jalview/ext/paradise/TestAnnotate3D.java
+++ b/
test/jalview/ext/paradise/TestAnnotate3D.java
@@
-40,9
+40,8
@@
import org.testng.AssertJUnit;
import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
-import MCview.PDBfile;
-
import compbio.util.FileUtil;
import compbio.util.FileUtil;
+import mc_view.PDBfile;
public class TestAnnotate3D
{
public class TestAnnotate3D
{
@@
-152,10
+151,10
@@
public class TestAnnotate3D
{
{
SequenceI struseq = null;
{
{
SequenceI struseq = null;
- String sq_ = new String(sq.getSequence()).toLowerCase();
+ String sq_ = sq.getSequenceAsString().toLowerCase();
for (SequenceI _struseq : pdbf.getSeqsAsArray())
{
for (SequenceI _struseq : pdbf.getSeqsAsArray())
{
- final String lowerCase = new String(_struseq.getSequence())
+ final String lowerCase = _struseq.getSequenceAsString()
.toLowerCase();
if (lowerCase.equals(sq_))
{
.toLowerCase();
if (lowerCase.equals(sq_))
{