- BufferedReader file=new BufferedReader(files.next()), id=new BufferedReader(ids.next());
- String iline, fline;
- do
- {
- iline = id.readLine();
- fline = file.readLine();
- if (iline != null)
- System.out.println(iline);
- if (fline != null)
- System.out.println(fline);
- // next assert fails for latest RNAview - because the XMLID entries change between file and ID based RNAML generation.
- assertTrue("Results differ for ID and file upload based retrieval (chain entry "+(++i)+")",
- ((iline == fline && iline == null) || (iline != null
- && fline != null && iline.equals(fline))));
+ BufferedReader file = new BufferedReader(files.next()), id = new BufferedReader(
+ ids.next());
+ String iline, fline;
+ do
+ {
+ iline = id.readLine();
+ fline = file.readLine();
+ if (iline != null)
+ System.out.println(iline);
+ if (fline != null)
+ System.out.println(fline);
+ // next assert fails for latest RNAview - because the XMLID entries
+ // change between file and ID based RNAML generation.
+ assertTrue(
+ "Results differ for ID and file upload based retrieval (chain entry "
+ + (++i) + ")",
+ ((iline == fline && iline == null) || (iline != null
+ && fline != null && iline.equals(fline))));