+
+ @Test(groups = "Functional")
+ public void testGetAtomSpec()
+ {
+ AtomSpecModel model = new AtomSpecModel();
+ assertEquals(ChimeraCommands.getAtomSpec(model, mockBinding), "");
+ model.addRange(1, 2, 4, "A");
+ assertEquals(ChimeraCommands.getAtomSpec(model, mockBinding),
+ "#1:2-4.A");
+ model.addRange(1, 8, 8, "A");
+ assertEquals(ChimeraCommands.getAtomSpec(model, mockBinding),
+ "#1:2-4.A,8.A");
+ model.addRange(1, 5, 7, "B");
+ assertEquals(ChimeraCommands.getAtomSpec(model, mockBinding),
+ "#1:2-4.A,8.A,5-7.B");
+ model.addRange(1, 3, 5, "A");
+ assertEquals(ChimeraCommands.getAtomSpec(model, mockBinding),
+ "#1:2-5.A,8.A,5-7.B");
+ model.addRange(0, 1, 4, "B");
+ assertEquals(ChimeraCommands.getAtomSpec(model, mockBinding),
+ "#0:1-4.B|#1:2-5.A,8.A,5-7.B");
+ model.addRange(0, 5, 9, "C");
+ assertEquals(ChimeraCommands.getAtomSpec(model, mockBinding),
+ "#0:1-4.B,5-9.C|#1:2-5.A,8.A,5-7.B");
+ model.addRange(1, 8, 10, "B");
+ assertEquals(ChimeraCommands.getAtomSpec(model, mockBinding),
+ "#0:1-4.B,5-9.C|#1:2-5.A,8.A,5-10.B");
+ model.addRange(1, 8, 9, "B");
+ assertEquals(ChimeraCommands.getAtomSpec(model, mockBinding),
+ "#0:1-4.B,5-9.C|#1:2-5.A,8.A,5-10.B");
+ model.addRange(0, 3, 10, "C"); // subsumes 5-9
+ assertEquals(ChimeraCommands.getAtomSpec(model, mockBinding),
+ "#0:1-4.B,3-10.C|#1:2-5.A,8.A,5-10.B");
+ model.addRange(5, 25, 35, " "); // empty chain code - e.g. from homology
+ // modelling
+ assertEquals(ChimeraCommands.getAtomSpec(model, mockBinding),
+ "#0:1-4.B,3-10.C|#1:2-5.A,8.A,5-10.B|#5:25-35.");
+
+ }