+ }
+
+ @Test(groups = "Functional")
+ public void testGetModelStartNo()
+ {
+ assertEquals(testee.getModelStartNo(), 0);
+ }
+
+ @Test(groups = "Functional")
+ public void testGetResidueSpec()
+ {
+ assertEquals(testee.getResidueSpec("ALA"), "::ALA");
+ }
+
+ @Test(groups = "Functional")
+ public void testShowBackbone()
+ {
+ List<StructureCommandI> cmds = testee.showBackbone();
+ assertEquals(cmds.size(), 1);
+ assertEquals(cmds.get(0).getCommand(),
+ "~display all;~ribbon;chain @CA|P");
+ }
+
+ @Test(groups = "Functional")
+ public void testOpenCommandFile()
+ {
+ assertEquals(testee.openCommandFile("nowhere").getCommand(),
+ "open cmd:nowhere");
+ }
+
+ @Test(groups = "Functional")
+ public void testSaveSession()
+ {
+ assertEquals(testee.saveSession("somewhere").getCommand(),
+ "save somewhere");
+ }
+
+ @Test(groups = "Functional")
+ public void testColourByChain()
+ {
+ assertEquals(testee.colourByChain().getCommand(), "rainbow chain");
+ }
+
+ @Test(groups = { "Functional" })
+ public void testSetBackgroundColour()
+ {
+ StructureCommandI cmd = testee.setBackgroundColour(Color.PINK);
+ assertEquals(cmd.getCommand(), "set bgColor #ffafaf");
+ }
+
+ @Test(groups = { "Functional" })
+ public void testLoadFile()
+ {
+ StructureCommandI cmd = testee.loadFile("/some/filepath");
+ assertEquals(cmd.getCommand(), "open /some/filepath");
+ }
+
+ @Test(groups = { "Functional" })
+ public void testOpenSession()
+ {
+ StructureCommandI cmd = testee.openSession("/some/filepath");
+ assertEquals(cmd.getCommand(), "open chimera:/some/filepath");
+ }
+
+ @Test(groups = "Functional")
+ public void testColourByCharge()
+ {
+ List<StructureCommandI> cmds = testee.colourByCharge();
+ assertEquals(cmds.size(), 1);
+ assertEquals(cmds.get(0)
+ .getCommand(),
+ "color white;color red ::ASP,GLU;color blue ::LYS,ARG;color yellow ::CYS");
+ }
+
+ @Test(groups = "Functional")
+ public void testGetColourCommand()
+ {
+ assertEquals(testee.colourResidues("something", Color.MAGENTA)
+ .getCommand(),
+ "color #ff00ff something");
+ }
+
+ @Test(groups = "Functional")
+ public void testFocusView()
+ {
+ assertEquals(testee.focusView().getCommand(), "focus");
+ }
+
+ @Test(groups = "Functional")
+ public void testSetAttribute()
+ {
+ AtomSpecModel model = new AtomSpecModel();
+ model.addRange("1", 89, 92, "A");
+ model.addRange("2", 12, 20, "B");
+ model.addRange("2", 8, 9, "B");
+ assertEquals(testee.setAttribute("jv_kd", "27.3", model).getCommand(),
+ "setattr res jv_kd '27.3' #1:89-92.A|#2:8-9.B,12-20.B");
+ }
+
+ @Test(groups = "Functional")
+ public void testCloseViewer()
+ {
+ assertEquals(testee.closeViewer(), new StructureCommand("stop really"));
+ }
+
+ @Test(groups = "Functional")
+ public void testGetSelectedResidues()
+ {
+ assertEquals(testee.getSelectedResidues(),
+ new StructureCommand("list selection level residue"));
+ }
+
+ @Test(groups = "Functional")
+ public void testListResidueAttributes()
+ {
+ assertEquals(testee.listResidueAttributes(),
+ new StructureCommand("list resattr"));
+ }
+
+ @Test(groups = "Functional")
+ public void testGetResidueAttributes()
+ {
+ assertEquals(testee.getResidueAttributes("binding site"),
+ new StructureCommand("list residues attr 'binding site'"));
+ }
+
+ @Test(groups = "Functional")
+ public void testStartNotifications()
+ {
+ List<StructureCommandI> cmds = testee.startNotifications("to here");
+ assertEquals(cmds.size(), 2);
+ assertEquals(cmds.get(0), new StructureCommand("listen start models url to here"));
+ assertEquals(cmds.get(1), new StructureCommand("listen start select prefix SelectionChanged url to here"));
+ }
+
+ @Test(groups = "Functional")
+ public void testStopNotifications()
+ {
+ List<StructureCommandI> cmds = testee.stopNotifications();
+ assertEquals(cmds.size(), 2);
+ assertEquals(cmds.get(0), new StructureCommand("listen stop models"));
+ assertEquals(cmds.get(1), new StructureCommand("listen stop selection"));