+ System.out.println("AVT consv: "
+ + viewport.getAlignmentConservationAnnotation());
+ try
+ {
+ wait(250); // BH increased from 50 -- was getting Quality in column 1
+ // is null
+ } catch (InterruptedException e)
+ {
+ }
+ System.out.println("AVT consv: "
+ + viewport.getAlignmentConservationAnnotation());