import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceGroup;
import jalview.io.DataSourceType;
import jalview.io.FileLoader;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceGroup;
import jalview.io.DataSourceType;
import jalview.io.FileLoader;
{
AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
"examples/uniref50.fa", DataSourceType.FILE);
{
AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
"examples/uniref50.fa", DataSourceType.FILE);
String expected = "Score = 80.0\n" + "Length of alignment = 4\n"
+ "Sequence FER1_PEA/29-32 (Sequence length = 7)\n"
+ "Sequence Q93XJ9_SOLTU/23-26 (Sequence length = 7)\n\n"
+ " FER1_PEA/29-32 TKAF\n" + " ||.\n"
String expected = "Score = 80.0\n" + "Length of alignment = 4\n"
+ "Sequence FER1_PEA/29-32 (Sequence length = 7)\n"
+ "Sequence Q93XJ9_SOLTU/23-26 (Sequence length = 7)\n\n"
+ " FER1_PEA/29-32 TKAF\n" + " ||.\n"
String seqs = ">Q93XJ9_SOLTU/23-29\nL-KAISNV\n>FER1_PEA/26-32\nV-TTTKAF\n";
AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(seqs,
DataSourceType.PASTE);
String seqs = ">Q93XJ9_SOLTU/23-29\nL-KAISNV\n>FER1_PEA/26-32\nV-TTTKAF\n";
AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(seqs,
DataSourceType.PASTE);
String expected = "Score = 80.0\n" + "Length of alignment = 4\n"
+ "Sequence FER1_PEA/29-32 (Sequence length = 7)\n"
+ "Sequence Q93XJ9_SOLTU/23-26 (Sequence length = 7)\n\n"
+ " FER1_PEA/29-32 TKAF\n" + " ||.\n"
String expected = "Score = 80.0\n" + "Length of alignment = 4\n"
+ "Sequence FER1_PEA/29-32 (Sequence length = 7)\n"
+ "Sequence Q93XJ9_SOLTU/23-26 (Sequence length = 7)\n\n"
+ " FER1_PEA/29-32 TKAF\n" + " ||.\n"