+
+ @Test(groups = "Functional")
+ public void testAmbiguousAminoAcidGetsStatusMessage()
+ {
+ SequenceI seq1 = new Sequence("Seq1", "ABCDE");
+ SequenceI seq2 = new Sequence("Seq2", "AB--E");
+ AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
+ AlignFrame alignFrame = new AlignFrame(al, al.getWidth(),
+ al.getHeight());
+ AlignmentI visAl = alignFrame.getViewport().getAlignment();
+ // Test either side of gap
+ // This first assert fails due to JAL-2563
+ assertEquals(
+ alignFrame.alignPanel.getSeqPanel().setStatusMessage(
+ visAl.getSequenceAt(1), 1, 1), 2);
+ assertTrue(alignFrame.statusBar.getText().contains("(2)"));
+ }