import jalview.datamodel.PDBEntry;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceI;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceI;
String query = StructureChooser.buildQuery(seq);
assertEquals("pdb_id:1tim", query);
String query = StructureChooser.buildQuery(seq);
assertEquals("pdb_id:1tim", query);
assertEquals("text:4kqy", query);
DBRefEntry uniprotDBRef = new DBRefEntry();
assertEquals("text:4kqy", query);
DBRefEntry uniprotDBRef = new DBRefEntry();
query = StructureChooser.buildQuery(seq);
assertEquals(
"uniprot_accession:P12345 OR uniprot_id:P12345 OR pdb_id:1xyz",
query = StructureChooser.buildQuery(seq);
assertEquals(
"uniprot_accession:P12345 OR uniprot_id:P12345 OR pdb_id:1xyz",
StructureChooser sc = new StructureChooser(selectedSeqs, seq, null);
sc.populateFilterComboBox(false, false);
int optionsSize = sc.getCmbFilterOption().getItemCount();
StructureChooser sc = new StructureChooser(selectedSeqs, seq, null);
sc.populateFilterComboBox(false, false);
int optionsSize = sc.getCmbFilterOption().getItemCount();
// populate filter options
sc.populateFilterComboBox(true, false);
// populate filter options
sc.populateFilterComboBox(true, false);
assertTrue(sc.getCmbFilterOption().getSelectedItem() != null);
FilterOption filterOpt = (FilterOption) sc.getCmbFilterOption()
.getSelectedItem();
assertTrue(sc.getCmbFilterOption().getSelectedItem() != null);
FilterOption filterOpt = (FilterOption) sc.getCmbFilterOption()
.getSelectedItem();
public void fetchStructuresInfoTest()
{
SequenceI[] selectedSeqs = new SequenceI[] { seq };
StructureChooser sc = new StructureChooser(selectedSeqs, seq, null);
sc.fetchStructuresMetaData();
public void fetchStructuresInfoTest()
{
SequenceI[] selectedSeqs = new SequenceI[] { seq };
StructureChooser sc = new StructureChooser(selectedSeqs, seq, null);
sc.fetchStructuresMetaData();
- assertTrue(sc.getDiscoveredStructuresSet() != null);
- assertTrue(sc.getDiscoveredStructuresSet().size() > 0);
+ Collection<FTSData> ss = (Collection<FTSData>) PA.getValue(sc,
+ "discoveredStructuresSet");
+ assertNotNull(ss);
+ assertTrue(ss.size() > 0);