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JAL-3829 more testing wit tdbeacons data columns and FTSclient
[jalview.git]
/
test
/
jalview
/
gui
/
StructureChooserTest.java
diff --git
a/test/jalview/gui/StructureChooserTest.java
b/test/jalview/gui/StructureChooserTest.java
index
f69e6b5
..
9529d9f
100644
(file)
--- a/
test/jalview/gui/StructureChooserTest.java
+++ b/
test/jalview/gui/StructureChooserTest.java
@@
-31,6
+31,7
@@
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceI;
import jalview.fts.api.FTSData;
import jalview.jbgui.GStructureChooser.FilterOption;
import jalview.datamodel.SequenceI;
import jalview.fts.api.FTSData;
import jalview.jbgui.GStructureChooser.FilterOption;
+import jalview.ws.params.InvalidArgumentException;
import java.util.Collection;
import java.util.Vector;
import java.util.Collection;
import java.util.Vector;
@@
-82,12
+83,13
@@
public class StructureChooserTest
seq = null;
}
seq = null;
}
+ @SuppressWarnings("deprecation")
@Test(groups = { "Functional" })
public void buildQueryTest()
{
@Test(groups = { "Functional" })
public void buildQueryTest()
{
+ System.out.println("seq >>>> " + seq);
String query = StructureChooser.buildQuery(seq);
assertEquals("pdb_id:1tim", query);
String query = StructureChooser.buildQuery(seq);
assertEquals("pdb_id:1tim", query);
- System.out.println("seq >>>> " + seq);
seq.getAllPDBEntries().clear();
query = StructureChooser.buildQuery(seq);
assertEquals(
seq.getAllPDBEntries().clear();
query = StructureChooser.buildQuery(seq);
assertEquals(
@@
-95,6
+97,7
@@
public class StructureChooserTest
query);
seq.setDBRefs(null);
query = StructureChooser.buildQuery(seq);
query);
seq.setDBRefs(null);
query = StructureChooser.buildQuery(seq);
+ System.out.println(query);
assertEquals("text:4kqy", query);
DBRefEntry uniprotDBRef = new DBRefEntry();
assertEquals("text:4kqy", query);
DBRefEntry uniprotDBRef = new DBRefEntry();
@@
-113,6
+116,9
@@
public class StructureChooserTest
dbRef.setAccessionId("XYZ_" + x);
seq.addDBRef(dbRef);
}
dbRef.setAccessionId("XYZ_" + x);
seq.addDBRef(dbRef);
}
+ System.out.println("");
+ System.out.println(seq.getDBRefs());
+ System.out.println(query);
query = StructureChooser.buildQuery(seq);
assertEquals(
"uniprot_accession:P12345 OR uniprot_id:P12345 OR pdb_id:1xyz",
query = StructureChooser.buildQuery(seq);
assertEquals(
"uniprot_accession:P12345 OR uniprot_id:P12345 OR pdb_id:1xyz",