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JAL-1645 source formatting and organise imports
[jalview.git]
/
test
/
jalview
/
io
/
AnnotatedPDBFileInputTest.java
diff --git
a/test/jalview/io/AnnotatedPDBFileInputTest.java
b/test/jalview/io/AnnotatedPDBFileInputTest.java
index
91e816a
..
f02226e
100644
(file)
--- a/
test/jalview/io/AnnotatedPDBFileInputTest.java
+++ b/
test/jalview/io/AnnotatedPDBFileInputTest.java
@@
-33,7
+33,7
@@
public class AnnotatedPDBFileInputTest
*
* @throws Exception
*/
*
* @throws Exception
*/
- @BeforeMethod(alwaysRun = true)
+ @BeforeMethod(alwaysRun = true)
public void setup() throws Exception
{
Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
public void setup() throws Exception
{
Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
@@
-48,7
+48,7
@@
public class AnnotatedPDBFileInputTest
.get(0).getId();
}
.get(0).getId();
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void checkNoDuplicates()
{
// not strictly a requirement, but strange things may happen if multiple
public void checkNoDuplicates()
{
// not strictly a requirement, but strange things may happen if multiple
@@
-61,14
+61,13
@@
public class AnnotatedPDBFileInputTest
{
for (int q = p + 1; q < avec.length; q++)
{
{
for (int q = p + 1; q < avec.length; q++)
{
- Assert.assertNotEquals(
- "Found a duplicate annotation row " + avec[p].label,
- avec[p], avec[q]);
+ Assert.assertNotEquals("Found a duplicate annotation row "
+ + avec[p].label, avec[p], avec[q]);
}
}
}
}
}
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void checkPDBannotationSource()
{
public void checkPDBannotationSource()
{
@@
-86,7
+85,7
@@
public class AnnotatedPDBFileInputTest
/**
* Check sequence features have been added
*/
/**
* Check sequence features have been added
*/
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void checkPDBSequenceFeatures()
{
/*
public void checkPDBSequenceFeatures()
{
/*
@@
-120,7
+119,7
@@
public class AnnotatedPDBFileInputTest
assertEquals("TYR: 314 1gaqC", sf[295].getDescription());
}
assertEquals("TYR: 314 1gaqC", sf[295].getDescription());
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void checkAnnotationWiring()
{
assertTrue(al.getAlignmentAnnotation() != null);
public void checkAnnotationWiring()
{
assertTrue(al.getAlignmentAnnotation() != null);
@@
-169,7
+168,7
@@
public class AnnotatedPDBFileInputTest
}
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testJalviewProjectRelocationAnnotation() throws Exception
{
public void testJalviewProjectRelocationAnnotation() throws Exception
{
@@
-194,7
+193,8
@@
public class AnnotatedPDBFileInputTest
sq = sq.getDatasetSequence();
}
assertNotNull(sq.getAllPDBEntries());
sq = sq.getDatasetSequence();
}
assertNotNull(sq.getAllPDBEntries());
- assertEquals("Expected only one PDB ID", sq.getAllPDBEntries().size(), 1);
+ assertEquals("Expected only one PDB ID",
+ sq.getAllPDBEntries().size(), 1);
for (PDBEntry pdbentry : sq.getAllPDBEntries())
{
System.err.println("PDB Entry " + pdbentry.getId() + " "
for (PDBEntry pdbentry : sq.getAllPDBEntries())
{
System.err.println("PDB Entry " + pdbentry.getId() + " "
@@
-207,8
+207,7
@@
public class AnnotatedPDBFileInputTest
&& MCview.PDBfile.isCalcIdHandled(ana.getCalcId()))
{
exists = true;
&& MCview.PDBfile.isCalcIdHandled(ana.getCalcId()))
{
exists = true;
- if (MCview.PDBfile.isCalcIdForFile(ana,
- pdbentry.getId()))
+ if (MCview.PDBfile.isCalcIdForFile(ana, pdbentry.getId()))
{
found = true;
}
{
found = true;
}