+
+ // TODO: make a better/more comprehensive test harness for identify/io
+
+ final static File ALIGN_FILE = new File(
+ "test/jalview/io/test_gz_fasta.gz");
+
+ final static File NOTGZALIGN_FILE = new File(
+ "test/jalview/io/test_gz_fasta_notgz.gz");
+
+ final static File STARS_FA_FILE1 = new File(
+ "test/jalview/io/test_fasta_stars.fa");
+
+ final static File STARS_FA_FILE2 = new File(
+ "test/jalview/io/test_fasta_stars2.fa");
+
+ private void assertValidFormat(String fmt, String src, FileParse fp)
+ {
+ assertTrue("Couldn't resolve " + src + " as a valid file", fp.isValid());
+ String type = new IdentifyFile().Identify(fp);
+ assertTrue("Data from '" + src + "' Expected to be '" + fmt
+ + "' identified as '" + type + "'", type.equalsIgnoreCase(fmt));
+ }
+
+ @Test
+ public void testStarsInFasta1() throws IOException
+ {
+ String uri;
+ FileParse fp = new FileParse(uri = STARS_FA_FILE1.getAbsoluteFile()
+ .toString(), AppletFormatAdapter.FILE);
+ assertValidFormat("FASTA", uri, fp);
+ }
+
+ @Test
+ public void testStarsInFasta2() throws IOException
+ {
+ String uri;
+ FileParse fp = new FileParse(uri = STARS_FA_FILE2.getAbsoluteFile()
+ .toString(), AppletFormatAdapter.FILE);
+ assertValidFormat("FASTA", uri, fp);
+ }