File dataFile = new File("test/jalview/io/J03321.gb");
FileParse fp = new FileParse(dataFile.getAbsolutePath(),
DataSourceType.FILE);
File dataFile = new File("test/jalview/io/J03321.gb");
FileParse fp = new FileParse(dataFile.getAbsolutePath(),
DataSourceType.FILE);
List<SequenceI> seqs = parser.getSeqs();
assertEquals(seqs.size(), 1);
List<SequenceI> seqs = parser.getSeqs();
assertEquals(seqs.size(), 1);
assertEquals(dbref.getSource(), "EMBLCDSPROTEIN");
assertEquals(dbref.getAccessionId(), "AAA91574.1");
mapping = dbref.getMap();
assertEquals(dbref.getSource(), "EMBLCDSPROTEIN");
assertEquals(dbref.getAccessionId(), "AAA91574.1");
mapping = dbref.getMap();
assertEquals(mapTo.getName(), "AAA91574.1");
// the /product qualifier transfers to protein product description
assertEquals(mapTo.getDescription(), "hypothetical protein");
assertEquals(mapTo.getName(), "AAA91574.1");
// the /product qualifier transfers to protein product description
assertEquals(mapTo.getDescription(), "hypothetical protein");