+ /**
+ * Additional tests for (a) Jalview features file with no colour
+ * specifications (old style 'groups' file) and (b) Jalview features file with
+ * embedded GFF
+ */
+ @Test(groups = "Functional")
+ public void testIdentify_featureFile()
+ {
+ IdentifyFile ider = new IdentifyFile();
+
+ // Jalview format with features only, no feature colours
+ String data = "Iron-sulfur (2Fe-2S)\tFER_CAPAA\t-1\t39\t39\tMETAL\n"
+ + "Iron-phosphorus (2Fe-P)\tID_NOT_SPECIFIED\t2\t86\t87\tMETALLIC\n";
+ Assert.assertEquals(IdentifyFile.FeaturesFile, ider.identify(data, AppletFormatAdapter.PASTE));
+
+ // Jalview feature colour followed by GFF format feature data
+ data = "METAL\tcc9900\n" + "GFF\n"
+ + "FER_CAPAA\tuniprot\tMETAL\t44\t45\t4.0\t.\t.\n";
+ Assert.assertEquals(IdentifyFile.FeaturesFile,
+ ider.identify(data, AppletFormatAdapter.PASTE));
+ }
+