JSONFile bioJsonFile = (JSONFile) formatAdapter.getAlignFile();
AlignFrame alignFrame = new AlignFrame(_alignment,
bioJsonFile.getHiddenSequences(),
JSONFile bioJsonFile = (JSONFile) formatAdapter.getAlignFile();
AlignFrame alignFrame = new AlignFrame(_alignment,
bioJsonFile.getHiddenSequences(),
AlignFrame.DEFAULT_HEIGHT);
// Change colour scheme to 'None' and perform round trip
ColourSchemeI cs = ColourSchemeMapper.getJalviewColourScheme(
AlignFrame.DEFAULT_HEIGHT);
// Change colour scheme to 'None' and perform round trip
ColourSchemeI cs = ColourSchemeMapper.getJalviewColourScheme(