+ StockholmFileTest.testFileIOwithFormat(
+ new File("examples/testdata/rna-alignment.xml"),
+ FileFormat.Stockholm, -1, -1, true, true, true);
+
+ }
+
+ @Test(groups= {"Functional"})
+ public void testRnamlSeqImport() throws IOException
+ {
+ RnamlFile parser = new RnamlFile("examples/testdata/7WKP-rna1.xml", DataSourceType.FILE);
+ SequenceI[] seqs = parser.getSeqsAsArray();
+ assertNotNull(seqs);
+ assertEquals(seqs.length,1);
+ assertEquals(seqs[0].getEnd()-seqs[0].getStart()+1,seqs[0].getSequence().length);