+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.renderer;
+
+import static org.testng.AssertJUnit.assertEquals;
+
+import jalview.datamodel.Alignment;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceI;
+import jalview.gui.AlignViewport;
+import jalview.gui.JvOptionPane;
+import jalview.schemes.UserColourScheme;
+import jalview.schemes.ZappoColourScheme;
+
+import java.awt.Color;
+
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
+
+public class ResidueColourFinderTest
+{
+
+ @BeforeClass(alwaysRun = true)
+ public void setUpJvOptionPane()
+ {
+ JvOptionPane.setInteractiveMode(false);
+ JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+ }
+
+ @Test(groups = { "Functional" })
+ public void testGetResidueColour_zappo()
+ {
+ SequenceI seq = new Sequence("name", "MATVLGSPRAPAFF"); // FER1_MAIZE...
+ AlignmentI al = new Alignment(new SequenceI[] { seq });
+ final AlignViewport av = new AlignViewport(al);
+ ResidueColourFinder rcf = new ResidueColourFinder();
+ av.setGlobalColourScheme(new ZappoColourScheme());
+
+ // @see ResidueProperties.zappo
+ assertEquals(Color.pink,
+ rcf.getResidueColour(true, av.getResidueShading(), null, seq, 0,
+ null)); // M
+ assertEquals(Color.green,
+ rcf.getResidueColour(true, av.getResidueShading(), null, seq, 2,
+ null)); // T
+ assertEquals(Color.magenta,
+ rcf.getResidueColour(true, av.getResidueShading(), null, seq, 5,
+ null)); // G
+ assertEquals(Color.orange,
+ rcf.getResidueColour(true, av.getResidueShading(), null, seq,
+ 12,
+ null)); // F
+
+ // everything is white if showBoxes is false
+ assertEquals(Color.white, rcf.getResidueColour(false,
+ av.getResidueShading(), null, seq, 0, null)); // M
+ assertEquals(Color.white, rcf.getResidueColour(false,
+ av.getResidueShading(), null, seq, 2, null)); // T
+ assertEquals(Color.white, rcf.getResidueColour(false,
+ av.getResidueShading(), null, seq, 5, null)); // G
+ assertEquals(Color.white, rcf.getResidueColour(false,
+ av.getResidueShading(), null, seq, 12, null)); // F
+ }
+
+ @Test(groups = { "Functional" })
+ public void testGetResidueColour_none()
+ {
+ SequenceI seq = new Sequence("name", "MA--TVLGSPRAPAFF");
+ AlignmentI al = new Alignment(new SequenceI[] { seq });
+ final AlignViewport av = new AlignViewport(al);
+ ResidueColourFinder rcf = new ResidueColourFinder();
+
+ assertEquals(Color.white,
+ rcf.getResidueColour(true, av.getResidueShading(),
+ null, seq, 0, null));
+ assertEquals(Color.white,
+ rcf.getResidueColour(true, av.getResidueShading(),
+ null, seq, 2, null));
+
+ // no change if showBoxes is false
+ assertEquals(Color.white, rcf.getResidueColour(false,
+ av.getResidueShading(), null, seq, 0, null));
+ assertEquals(Color.white, rcf.getResidueColour(false,
+ av.getResidueShading(), null, seq, 2, null));
+ }
+
+ @Test(groups = { "Functional" })
+ public void testGetResidueColour_userdef()
+ {
+ SequenceI seq = new Sequence("name", "MAT--GSPRAPAFF"); // FER1_MAIZE... + a
+ // gap
+ AlignmentI al = new Alignment(new SequenceI[] { seq });
+ final AlignViewport av = new AlignViewport(al);
+ ResidueColourFinder rcf = new ResidueColourFinder();
+
+ Color[] newColours = new Color[24];
+ for (int i = 0; i < 24; i++)
+ {
+ newColours[i] = null;
+ }
+
+ av.setGlobalColourScheme(new UserColourScheme(newColours));
+
+ // gap colour not specified so gap colour is null
+ // this is consistent with previous behaviour, but may not be correct?
+ assertEquals(null, rcf.getResidueColour(true, av.getResidueShading(),
+ null, seq, 3, null));
+
+ newColours[23] = Color.pink;
+ av.setGlobalColourScheme(new UserColourScheme(newColours));
+
+ // gap colour specified as pink
+ assertEquals(Color.pink, rcf.getResidueColour(true,
+ av.getResidueShading(),
+ null, seq, 3, null));
+
+ // everything is white if showBoxes is false
+ newColours[23] = null;
+ assertEquals(Color.white, rcf.getResidueColour(false,
+ av.getResidueShading(),
+ null, seq, 3, null));
+
+ newColours[23] = Color.pink;
+ av.setGlobalColourScheme(new UserColourScheme(newColours));
+
+ // gap colour specified as pink
+ assertEquals(Color.white, rcf.getResidueColour(false,
+ av.getResidueShading(), null, seq, 3, null));
+ }
+
+ // TODO more tests for getResidueColour covering groups, feature rendering...
+}