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spike branch updated from latest features/JAL-2446
[jalview.git]
/
test
/
jalview
/
renderer
/
seqfeatures
/
FeatureRendererTest.java
diff --git
a/test/jalview/renderer/seqfeatures/FeatureRendererTest.java
b/test/jalview/renderer/seqfeatures/FeatureRendererTest.java
index
3e27aba
..
dc86605
100644
(file)
--- a/
test/jalview/renderer/seqfeatures/FeatureRendererTest.java
+++ b/
test/jalview/renderer/seqfeatures/FeatureRendererTest.java
@@
-267,15
+267,20
@@
public class FeatureRendererTest
fr.filterFeaturesForDisplay(features, null); // empty list, does nothing
SequenceI seq = av.getAlignment().getSequenceAt(0);
fr.filterFeaturesForDisplay(features, null); // empty list, does nothing
SequenceI seq = av.getAlignment().getSequenceAt(0);
- SequenceFeature sf1 = new SequenceFeature("Cath", "", 6, 8, "group1");
+ SequenceFeature sf1 = new SequenceFeature("Cath", "", 6, 8, Float.NaN,
+ "group1");
seq.addSequenceFeature(sf1);
seq.addSequenceFeature(sf1);
- SequenceFeature sf2 = new SequenceFeature("Cath", "", 5, 11, "group2");
+ SequenceFeature sf2 = new SequenceFeature("Cath", "", 5, 11, 2f,
+ "group2");
seq.addSequenceFeature(sf2);
seq.addSequenceFeature(sf2);
- SequenceFeature sf3 = new SequenceFeature("Cath", "", 5, 11, "group3");
+ SequenceFeature sf3 = new SequenceFeature("Cath", "", 5, 11, 3f,
+ "group3");
seq.addSequenceFeature(sf3);
seq.addSequenceFeature(sf3);
- SequenceFeature sf4 = new SequenceFeature("Cath", "", 6, 8, "group4");
+ SequenceFeature sf4 = new SequenceFeature("Cath", "", 6, 8, 4f,
+ "group4");
seq.addSequenceFeature(sf4);
seq.addSequenceFeature(sf4);
- SequenceFeature sf5 = new SequenceFeature("Cath", "", 6, 9, "group4");
+ SequenceFeature sf5 = new SequenceFeature("Cath", "", 6, 9, 5f,
+ "group4");
seq.addSequenceFeature(sf5);
fr.findAllFeatures(true);
seq.addSequenceFeature(sf5);
fr.findAllFeatures(true);
@@
-329,6
+334,7
@@
public class FeatureRendererTest
/*
* no filtering of co-located features with graduated colour scheme
/*
* no filtering of co-located features with graduated colour scheme
+ * filterFeaturesForDisplay does _not_ check colour threshold
* sf2 is removed as its group is hidden
*/
features = seq.getSequenceFeatures();
* sf2 is removed as its group is hidden
*/
features = seq.getSequenceFeatures();