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JAL-1926 JAL-2106 fix name for flag controlling addition of secondary structure annot...
[jalview.git]
/
test
/
jalview
/
schemes
/
ScoreMatrixPrinter.java
diff --git
a/test/jalview/schemes/ScoreMatrixPrinter.java
b/test/jalview/schemes/ScoreMatrixPrinter.java
index
d058c24
..
293690b
100644
(file)
--- a/
test/jalview/schemes/ScoreMatrixPrinter.java
+++ b/
test/jalview/schemes/ScoreMatrixPrinter.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-24,29
+24,31
@@
import jalview.api.analysis.ScoreModelI;
import java.util.Map;
import java.util.Map;
-import org.junit.Test;
+import org.testng.annotations.Test;
-
-public class ScoreMatrixPrinter
+public class ScoreMatrixPrinter
{
{
- @Test
+ @Test(groups = { "Functional" })
public void printAllMatrices()
{
public void printAllMatrices()
{
- for (Map.Entry<String,ScoreModelI> sm: ResidueProperties.scoreMatrices.entrySet())
+ for (Map.Entry<String, ScoreModelI> sm : ResidueProperties.scoreMatrices
+ .entrySet())
{
{
- System.out.println("Matrix "+sm.getKey());
+ System.out.println("Matrix " + sm.getKey());
System.out.println(sm.getValue().toString());
}
}
System.out.println(sm.getValue().toString());
}
}
- @Test
+
+ @Test(groups = { "Functional" })
public void printHTMLMatrices()
{
public void printHTMLMatrices()
{
- for (Map.Entry<String,ScoreModelI> _sm: ResidueProperties.scoreMatrices.entrySet())
+ for (Map.Entry<String, ScoreModelI> _sm : ResidueProperties.scoreMatrices
+ .entrySet())
{
if (_sm.getValue() instanceof ScoreMatrix)
{
ScoreMatrix sm = (ScoreMatrix) _sm.getValue();
{
if (_sm.getValue() instanceof ScoreMatrix)
{
ScoreMatrix sm = (ScoreMatrix) _sm.getValue();
- System.out.println("Matrix "+_sm.getKey());
+ System.out.println("Matrix " + _sm.getKey());
System.out.println(sm.outputMatrix(true));
}
}
System.out.println(sm.outputMatrix(true));
}
}