git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-3291 issue fixed, passing tests added
[jalview.git]
/
test
/
jalview
/
structure
/
StructureSelectionManagerTest.java
diff --git
a/test/jalview/structure/StructureSelectionManagerTest.java
b/test/jalview/structure/StructureSelectionManagerTest.java
index
a882bce
..
286be1b
100644
(file)
--- a/
test/jalview/structure/StructureSelectionManagerTest.java
+++ b/
test/jalview/structure/StructureSelectionManagerTest.java
@@
-27,6
+27,7
@@
import static org.testng.AssertJUnit.assertTrue;
import jalview.analysis.AlignmentUtils;
import jalview.api.structures.JalviewStructureDisplayI;
import jalview.analysis.AlignmentUtils;
import jalview.api.structures.JalviewStructureDisplayI;
+import jalview.bin.Cache;
import jalview.datamodel.AlignedCodonFrame;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.AlignedCodonFrame;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
@@
-46,6
+47,7
@@
import jalview.io.FileLoader;
import jalview.io.Jalview2xmlBase;
import jalview.io.StructureFile;
import jalview.util.MapList;
import jalview.io.Jalview2xmlBase;
import jalview.io.StructureFile;
import jalview.util.MapList;
+import jalview.ws.DBRefFetcher;
import jalview.ws.sifts.SiftsSettings;
import java.util.ArrayList;
import jalview.ws.sifts.SiftsSettings;
import java.util.ArrayList;
@@
-349,6
+351,9
@@
public class StructureSelectionManagerTest extends Jalview2xmlBase
public void testAssociatedMappingToSubSeq() throws Exception
{
public void testAssociatedMappingToSubSeq() throws Exception
{
+ // currently this test fails if trimming is enabled
+ Cache.setProperty(DBRefFetcher.TRIM_RETRIEVED_SEQUENCES,
+ Boolean.FALSE.toString());
String TEMP_FACTOR_AA="Temperature Factor";
String PDBID = "4IM2";
String FullLengthSeq = ">TBK1_HUMAN Serine/threonine-protein kinase TBK1\n" +
String TEMP_FACTOR_AA="Temperature Factor";
String PDBID = "4IM2";
String FullLengthSeq = ">TBK1_HUMAN Serine/threonine-protein kinase TBK1\n" +