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JAL-3148 SequenceRenderer, ResidueColourFinder overloads and
[jalview.git]
/
test
/
jalview
/
structures
/
models
/
AAStructureBindingModelTest.java
diff --git
a/test/jalview/structures/models/AAStructureBindingModelTest.java
b/test/jalview/structures/models/AAStructureBindingModelTest.java
index
af02d5e
..
1b5045a
100644
(file)
--- a/
test/jalview/structures/models/AAStructureBindingModelTest.java
+++ b/
test/jalview/structures/models/AAStructureBindingModelTest.java
@@
-26,7
+26,7
@@
import static org.testng.AssertJUnit.assertTrue;
import jalview.api.AlignmentViewPanel;
import jalview.api.FeatureRenderer;
import jalview.api.AlignmentViewPanel;
import jalview.api.FeatureRenderer;
-import jalview.api.SequenceRenderer;
+import jalview.api.SequenceRendererI;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.HiddenColumns;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.HiddenColumns;
@@
-139,21
+139,16
@@
public class AAStructureBindingModelTest
@Override
public void updateColours(Object source)
{
@Override
public void updateColours(Object source)
{
- // TODO Auto-generated method stub
-
}
@Override
public void releaseReferences(Object svl)
{
}
@Override
public void releaseReferences(Object svl)
{
- // TODO Auto-generated method stub
-
}
@Override
public String[] getStructureFiles()
{
}
@Override
public String[] getStructureFiles()
{
- // TODO Auto-generated method stub
return null;
}
return null;
}
@@
-161,57
+156,41
@@
public class AAStructureBindingModelTest
public String superposeStructures(AlignmentI[] alignments,
int[] structureIndices, HiddenColumns[] hiddenCols)
{
public String superposeStructures(AlignmentI[] alignments,
int[] structureIndices, HiddenColumns[] hiddenCols)
{
- // TODO Auto-generated method stub
return null;
}
@Override
return null;
}
@Override
- public void setJalviewColourScheme(ColourSchemeI cs)
+ public void setSimpleColourScheme(ColourSchemeI cs)
{
{
- // TODO Auto-generated method stub
-
}
@Override
public void setBackgroundColour(Color col)
{
}
@Override
public void setBackgroundColour(Color col)
{
- // TODO Auto-generated method stub
}
@Override
public void highlightAtoms(List<AtomSpec> atoms)
{
}
@Override
public void highlightAtoms(List<AtomSpec> atoms)
{
- // TODO Auto-generated method stub
-
- }
-
- @Override
- public SequenceRenderer getSequenceRenderer(AlignmentViewPanel alignment)
- {
- // TODO Auto-generated method stub
- return null;
}
@Override
public FeatureRenderer getFeatureRenderer(AlignmentViewPanel alignment)
{
}
@Override
public FeatureRenderer getFeatureRenderer(AlignmentViewPanel alignment)
{
- // TODO Auto-generated method stub
return null;
}
@Override
protected StructureMappingcommandSet[] getColourBySequenceCommands(
return null;
}
@Override
protected StructureMappingcommandSet[] getColourBySequenceCommands(
- String[] files, SequenceRenderer sr, AlignmentViewPanel avp)
+ String[] files, SequenceRendererI sr, AlignmentViewPanel avp)
{
{
- // TODO Auto-generated method stub
return null;
}
@Override
public List<String> getChainNames()
{
return null;
}
@Override
public List<String> getChainNames()
{
- // TODO Auto-generated method stub
return null;
}
return null;
}
@@
-219,22
+198,16
@@
public class AAStructureBindingModelTest
protected void colourBySequence(
StructureMappingcommandSet[] colourBySequenceCommands)
{
protected void colourBySequence(
StructureMappingcommandSet[] colourBySequenceCommands)
{
- // TODO Auto-generated method stub
-
}
@Override
public void colourByCharge()
{
}
@Override
public void colourByCharge()
{
- // TODO Auto-generated method stub
-
}
@Override
public void colourByChain()
{
}
@Override
public void colourByChain()
{
- // TODO Auto-generated method stub
-
}
};
String[][] chains = binder.getChains();
}
};
String[][] chains = binder.getChains();
@@
-311,7
+284,7
@@
public class AAStructureBindingModelTest
}
@Override
}
@Override
- public void setJalviewColourScheme(ColourSchemeI cs)
+ public void setSimpleColourScheme(ColourSchemeI cs)
{
}
{
}
@@
-329,14
+302,7
@@
public class AAStructureBindingModelTest
@Override
protected StructureMappingcommandSet[] getColourBySequenceCommands(
@Override
protected StructureMappingcommandSet[] getColourBySequenceCommands(
- String[] files, SequenceRenderer sr, AlignmentViewPanel avp)
- {
- return null;
- }
-
- @Override
- public SequenceRenderer getSequenceRenderer(
- AlignmentViewPanel alignment)
+ String[] files, SequenceRendererI sr, AlignmentViewPanel avp)
{
return null;
}
{
return null;
}