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JAL-3248 Added step to create the eclipse files before project import. Noted non...
[jalview.git]
/
test
/
jalview
/
util
/
ComparisonTest.java
diff --git
a/test/jalview/util/ComparisonTest.java
b/test/jalview/util/ComparisonTest.java
index
ec1779b
..
6f6841d
100644
(file)
--- a/
test/jalview/util/ComparisonTest.java
+++ b/
test/jalview/util/ComparisonTest.java
@@
-115,7
+115,7
@@
public class ComparisonTest
@Test(groups = { "Functional" })
public void testPID_includingGaps()
{
@Test(groups = { "Functional" })
public void testPID_includingGaps()
{
- String seq1 = "ABCDEF";
+ String seq1 = "ABCDEFG"; // extra length here is ignored
String seq2 = "abcdef";
assertEquals("identical", 100f, Comparison.PID(seq1, seq2), 0.001f);
String seq2 = "abcdef";
assertEquals("identical", 100f, Comparison.PID(seq1, seq2), 0.001f);
@@
-165,7
+165,8
@@
public class ComparisonTest
public void testPID_ungappedOnly()
{
// 5 identical, 2 gap-gap, 2 gap-residue, 1 mismatch
public void testPID_ungappedOnly()
{
// 5 identical, 2 gap-gap, 2 gap-residue, 1 mismatch
- String seq1 = "a--b-cdefh";
+ // the extra length of seq1 is ignored
+ String seq1 = "a--b-cdefhr";
String seq2 = "a---bcdefg";
int length = seq1.length();
String seq2 = "a---bcdefg";
int length = seq1.length();