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Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
[jalview.git]
/
test
/
jalview
/
util
/
MappingUtilsTest.java
diff --git
a/test/jalview/util/MappingUtilsTest.java
b/test/jalview/util/MappingUtilsTest.java
index
9985fb3
..
2c0045b
100644
(file)
--- a/
test/jalview/util/MappingUtilsTest.java
+++ b/
test/jalview/util/MappingUtilsTest.java
@@
-36,7
+36,7
@@
public class MappingUtilsTest
/**
* Simple test of mapping with no intron involved.
*/
/**
* Simple test of mapping with no intron involved.
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testBuildSearchResults()
{
final Sequence seq1 = new Sequence("Seq1", "C-G-TA-GC");
public void testBuildSearchResults()
{
final Sequence seq1 = new Sequence("Seq1", "C-G-TA-GC");
@@
-89,7
+89,7
@@
public class MappingUtilsTest
/**
* Simple test of mapping with introns involved.
*/
/**
* Simple test of mapping with introns involved.
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testBuildSearchResults_withIntron()
{
final Sequence seq1 = new Sequence("Seq1", "C-G-TAGA-GCAGCTT");
public void testBuildSearchResults_withIntron()
{
final Sequence seq1 = new Sequence("Seq1", "C-G-TAGA-GCAGCTT");
@@
-166,7
+166,7
@@
public class MappingUtilsTest
*
* @throws IOException
*/
*
* @throws IOException
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testMapSequenceGroup_sequences() throws IOException
{
/*
public void testMapSequenceGroup_sequences() throws IOException
{
/*
@@
-259,7
+259,7
@@
public class MappingUtilsTest
*
* @throws IOException
*/
*
* @throws IOException
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testMapColumnSelection_proteinToDna() throws IOException
{
setupMappedAlignments();
public void testMapColumnSelection_proteinToDna() throws IOException
{
setupMappedAlignments();
@@
-357,7
+357,7
@@
public class MappingUtilsTest
*
* @throws IOException
*/
*
* @throws IOException
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testMapColumnSelection_dnaToProtein() throws IOException
{
setupMappedAlignments();
public void testMapColumnSelection_dnaToProtein() throws IOException
{
setupMappedAlignments();
@@
-384,7
+384,7
@@
public class MappingUtilsTest
assertEquals("[0, 1, 3]", cs.getSelected().toString());
}
assertEquals("[0, 1, 3]", cs.getSelected().toString());
}
- @Test
+ @Test(groups ={ "Functional" })
public void testMapColumnSelection_null() throws IOException
{
setupMappedAlignments();
public void testMapColumnSelection_null() throws IOException
{
setupMappedAlignments();
@@
-397,7
+397,7
@@
public class MappingUtilsTest
* Tests for the method that converts a series of [start, end] ranges to
* single positions
*/
* Tests for the method that converts a series of [start, end] ranges to
* single positions
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testFlattenRanges()
{
assertEquals("[1, 2, 3, 4]",
public void testFlattenRanges()
{
assertEquals("[1, 2, 3, 4]",
@@
-423,7
+423,7
@@
public class MappingUtilsTest
*
* @throws IOException
*/
*
* @throws IOException
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testMapSequenceGroup_columns() throws IOException
{
/*
public void testMapSequenceGroup_columns() throws IOException
{
/*
@@
-506,7
+506,7
@@
public class MappingUtilsTest
*
* @throws IOException
*/
*
* @throws IOException
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testMapSequenceGroup_region() throws IOException
{
/*
public void testMapSequenceGroup_region() throws IOException
{
/*
@@
-600,7
+600,7
@@
public class MappingUtilsTest
assertEquals(4, mappedGroup.getEndRes());
}
assertEquals(4, mappedGroup.getEndRes());
}
- @Test
+ @Test(groups ={ "Functional" })
public void testFindMappingsForSequence()
{
SequenceI seq1 = new Sequence("Seq1", "ABC");
public void testFindMappingsForSequence()
{
SequenceI seq1 = new Sequence("Seq1", "ABC");