+
+ // make visible alignment height = 0
+ smallAl.getHiddenSequences().hideSequence(smallAl.getSequenceAt(0));
+ smallAl.getHiddenSequences().hideSequence(smallAl.getSequenceAt(0));
+ ViewportRanges vrsmall = new ViewportRanges(smallAl);
+ vrsmall.setStartEndSeq(0, 3);
+ assertEquals(vrsmall.getStartSeq(), 0);
+ assertEquals(vrsmall.getEndSeq(), 0);