import jalview.bin.Cache;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
import jalview.ws.seqfetcher.DbSourceProxy;
import jalview.bin.Cache;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
import jalview.ws.seqfetcher.DbSourceProxy;
public void testRnaSeqRetrieve() throws Exception
{
List<DbSourceProxy> sps = sf.getSourceProxy("PDB");
public void testRnaSeqRetrieve() throws Exception
{
List<DbSourceProxy> sps = sf.getSourceProxy("PDB");
{
assertTrue("No annotation transfered to sequence.",
sq.getAnnotation().length > 0);
{
assertTrue("No annotation transfered to sequence.",
sq.getAnnotation().length > 0);
- assertTrue("No PDBEntry on sequence.", sq.getPDBId().size() > 0);
- assertTrue("No RNA annotation on sequence.", sq.getRNA() != null);
+ assertTrue("No PDBEntry on sequence.", sq.getAllPDBEntries().size() > 0);
+ assertTrue(
+ "No RNA annotation on sequence, possibly http://arn-ibmc.in2p3.fr/api/compute/2d not available?",
+ sq.getRNA() != null);