Cache.applicationProperties.setProperty("ADD_SS_ANN",
Boolean.TRUE.toString());
Cache.applicationProperties.setProperty("ADD_SS_ANN",
Boolean.TRUE.toString());
private void testRetrieveProteinSeqFromPDB() throws Exception
{
List<DbSourceProxy> sps = sf.getSourceProxy("PDB");
private void testRetrieveProteinSeqFromPDB() throws Exception
{
List<DbSourceProxy> sps = sf.getSourceProxy("PDB");
for (TestRetrieveObject str : toRetrieve)
{
AlignmentI response = sps.get(0).getSequenceRecords(str.id);
for (TestRetrieveObject str : toRetrieve)
{
AlignmentI response = sps.get(0).getSequenceRecords(str.id);
sq.getAllPDBEntries().size() > 0);
// FIXME: should test that all residues extracted as sequences from
// chains in structure have a mapping to data in the structure
sq.getAllPDBEntries().size() > 0);
// FIXME: should test that all residues extracted as sequences from
// chains in structure have a mapping to data in the structure