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JAL-1988 Some TEST code accidentally left in now removed -- was affecting some saved...
[jalview.git]
/
test
/
jalview
/
ws
/
PDBSequenceFetcherTest.java
diff --git
a/test/jalview/ws/PDBSequenceFetcherTest.java
b/test/jalview/ws/PDBSequenceFetcherTest.java
index
9efcef2
..
d1e32b9
100644
(file)
--- a/
test/jalview/ws/PDBSequenceFetcherTest.java
+++ b/
test/jalview/ws/PDBSequenceFetcherTest.java
@@
-62,7
+62,7
@@
public class PDBSequenceFetcherTest
Cache.applicationProperties.setProperty("ADD_SS_ANN",
Boolean.TRUE.toString());
Cache.applicationProperties.setProperty("ADD_SS_ANN",
Boolean.TRUE.toString());
- sf = new SequenceFetcher(false);
+ sf = new SequenceFetcher();
}
/**
}
/**
@@
-132,6
+132,7
@@
public class PDBSequenceFetcherTest
private void testRetrieveProteinSeqFromPDB() throws Exception
{
List<DbSourceProxy> sps = sf.getSourceProxy("PDB");
private void testRetrieveProteinSeqFromPDB() throws Exception
{
List<DbSourceProxy> sps = sf.getSourceProxy("PDB");
+ StringBuilder errors = new StringBuilder();
for (TestRetrieveObject str : toRetrieve)
{
AlignmentI response = sps.get(0).getSequenceRecords(str.id);
for (TestRetrieveObject str : toRetrieve)
{
AlignmentI response = sps.get(0).getSequenceRecords(str.id);
@@
-174,11
+175,11
@@
public class PDBSequenceFetcherTest
lastp = sq.findPosition(col - 1);
}
}
lastp = sq.findPosition(col - 1);
}
}
- if (errors.length() > 0)
- {
- Assert.fail(errors.toString());
- }
}
}
}
}
+ if (errors.length() > 0)
+ {
+ Assert.fail(errors.toString());
+ }
}
}
}
}