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JAL-1735 test to ensure uniref90_repid type queries are resolved by uniprot sequence...
[jalview.git]
/
test
/
jalview
/
ws
/
dbsources
/
UniprotTest.java
diff --git
a/test/jalview/ws/dbsources/UniprotTest.java
b/test/jalview/ws/dbsources/UniprotTest.java
index
7325527
..
cdf5ac1
100644
(file)
--- a/
test/jalview/ws/dbsources/UniprotTest.java
+++ b/
test/jalview/ws/dbsources/UniprotTest.java
@@
-1,7
+1,12
@@
package jalview.ws.dbsources;
import static org.junit.Assert.assertEquals;
package jalview.ws.dbsources;
import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertNull;
import static org.junit.Assert.assertNull;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.PDBEntry;
+import jalview.datamodel.SequenceFeature;
+import jalview.datamodel.UniprotEntry;
import java.io.Reader;
import java.io.StringReader;
import java.io.Reader;
import java.io.StringReader;
@@
-9,10
+14,6
@@
import java.util.Vector;
import org.junit.Test;
import org.junit.Test;
-import jalview.datamodel.PDBEntry;
-import jalview.datamodel.SequenceFeature;
-import jalview.datamodel.UniprotEntry;
-
public class UniprotTest
{
// adapted from http://www.uniprot.org/uniprot/A9CKP4.xml
public class UniprotTest
{
// adapted from http://www.uniprot.org/uniprot/A9CKP4.xml
@@
-121,4
+122,12
@@
public class UniprotTest
assertEquals(expectedName, Uniprot.constructSequenceFastaHeader(entry)
.toString());
}
assertEquals(expectedName, Uniprot.constructSequenceFastaHeader(entry)
.toString());
}
+
+ @Test
+ public void testuniref90_retrieve() throws Exception
+ {
+ AlignmentI rtn = new Uniprot().getSequenceRecords("UniRef90_V5TUP6");
+ assertNotNull(rtn);
+ assertEquals(rtn.getHeight(), 1);
+ }
}
}