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JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam configurable
[jalview.git]
/
test
/
jalview
/
ws
/
dbsources
/
XfamFetcherTest.java
diff --git
a/test/jalview/ws/dbsources/XfamFetcherTest.java
b/test/jalview/ws/dbsources/XfamFetcherTest.java
index
2f28484
..
51cff6e
100644
(file)
--- a/
test/jalview/ws/dbsources/XfamFetcherTest.java
+++ b/
test/jalview/ws/dbsources/XfamFetcherTest.java
@@
-49,12
+49,16
@@
public class XfamFetcherTest
Assert.assertTrue(seedrf.getHeight() > 1,
"Seed Alignment for " + rfs.getTestQuery()
+ " didn't contain more than one sequence.");
Assert.assertTrue(seedrf.getHeight() > 1,
"Seed Alignment for " + rfs.getTestQuery()
+ " didn't contain more than one sequence.");
+ Assert.assertTrue(seedrf.getProperties().size() > 0,
+ "Seed Alignment for " + rfs.getTestQuery()
+ + " didn't have any properties.");
+
}
@Test(groups = { "External" })
public void testPfamFullAndSeed() throws Exception
{
}
@Test(groups = { "External" })
public void testPfamFullAndSeed() throws Exception
{
- PfamFull pff = new PfamFull();
+ Pfam pff = new PfamFull();
PfamSeed pfseed = new PfamSeed();
AlignmentI fullpf = pff.getSequenceRecords(pff.getTestQuery());
PfamSeed pfseed = new PfamSeed();
AlignmentI fullpf = pff.getSequenceRecords(pff.getTestQuery());
@@
-66,9
+70,16
@@
public class XfamFetcherTest
AlignmentI seedpf = pfseed.getSequenceRecords(pff.getTestQuery());
Assert.assertNotNull(seedpf, "Seed Alignment for " + pff.getTestQuery()
+ " didn't retrieve.");
AlignmentI seedpf = pfseed.getSequenceRecords(pff.getTestQuery());
Assert.assertNotNull(seedpf, "Seed Alignment for " + pff.getTestQuery()
+ " didn't retrieve.");
+ Assert.assertTrue(seedpf.getProperties().size() > 0,
+ "Seed Alignment for " + pfseed.getTestQuery()
+ + " didn't have any properties.");
Assert.assertTrue(seedpf.getHeight() < fullpf.getHeight(),
"Expected Full alignment to have more sequences than seed for "
+ pff.getTestQuery());
Assert.assertTrue(seedpf.getHeight() < fullpf.getHeight(),
"Expected Full alignment to have more sequences than seed for "
+ pff.getTestQuery());
+ Assert.assertTrue(fullpf.getProperties().size() > 0,
+ "Full Alignment for " + pff.getTestQuery()
+ + " didn't have any properties.");
+
}
}
}
}