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JAL-2349 JAL-3855 Integrate pAE retrieval in StructureFile so it can be transferred...
[jalview.git]
/
test
/
jalview
/
ws
/
seqfetcher
/
DbRefFetcherTest.java
diff --git
a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
index
6769d39
..
d2b5aec
100644
(file)
--- a/
test/jalview/ws/seqfetcher/DbRefFetcherTest.java
+++ b/
test/jalview/ws/seqfetcher/DbRefFetcherTest.java
@@
-20,12
+20,20
@@
*/
package jalview.ws.seqfetcher;
*/
package jalview.ws.seqfetcher;
-import static org.testng.Assert.assertNotEquals;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertFalse;
import static org.testng.AssertJUnit.assertNotNull;
import static org.testng.AssertJUnit.assertTrue;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertFalse;
import static org.testng.AssertJUnit.assertNotNull;
import static org.testng.AssertJUnit.assertTrue;
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.List;
+
+import org.junit.Assert;
+import org.testng.annotations.AfterClass;
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
+
import jalview.analysis.CrossRef;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
import jalview.analysis.CrossRef;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
@@
-43,15
+51,6
@@
import jalview.ws.dbsources.EBIAlfaFold;
import jalview.ws.dbsources.Pdb;
import jalview.ws.dbsources.Uniprot;
import jalview.ws.dbsources.Pdb;
import jalview.ws.dbsources.Uniprot;
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.List;
-
-import org.junit.Assert;
-import org.testng.annotations.AfterClass;
-import org.testng.annotations.BeforeClass;
-import org.testng.annotations.Test;
-
/**
* @author jimp
*
/**
* @author jimp
*
@@
-240,18
+239,21
@@
public class DbRefFetcherTest
public void testAlphaFoldClien() throws Exception
{
DbSourceProxy alphafold = new EBIAlfaFold();
public void testAlphaFoldClien() throws Exception
{
DbSourceProxy alphafold = new EBIAlfaFold();
- AlignmentI resp = alphafold.getSequenceRecords(alphafold.getTestQuery());
+ AlignmentI resp = alphafold
+ .getSequenceRecords(alphafold.getTestQuery());
assertNotNull(resp);
assertNotNull(resp);
- assertEquals("One sequence only",resp.getHeight(), 1);
- for (AlignmentAnnotation aa:resp.getAlignmentAnnotation()) {
+ assertEquals("One sequence only", resp.getHeight(), 1);
+ for (AlignmentAnnotation aa : resp.getAlignmentAnnotation())
+ {
if (aa.graph == AlignmentAnnotation.CUSTOMRENDERER)
{
if (aa.graph == AlignmentAnnotation.CUSTOMRENDERER)
{
- assertTrue("Contact map didn't provide valid contact",resp.getContactListFor(aa, 1).getContactAt(1)!=-1d);
+ assertTrue("Contact map didn't provide valid contact",
+ resp.getContactListFor(aa, 1).getContactAt(1) != -1d);
// test passes
return;
}
}
// test passes
return;
}
}
- Assert.fail();
+ Assert.fail("No pAE matrix found for alphafold structure.");
}
}
}
}