-= Generalized Speciation Duplication Inference
-
-== Purpose ==
-
-Infer duplication events on a gene tree given a trusted species tree.
-
-== Usage ==
-{{{
-java -Xmx1024m -cp
-path/to/forester.jar org.forester.application.gene_tree_preprocess <input tree in NH, NHX, Nexus, or phyloXML>
-}}}
-
-
-
-== Details ==
-
-Output consists of three files:
- * input-name_preprocessed_gene_tree.phylo.xml
- * input-name_species_present.txt
- * input-name_removed_nodes.txt
-
-
-== Download ==
-
-Download forester.jar here: http://code.google.com/p/forester/downloads/list
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