+... to be done
+
+== Calculating a Multiple Sequence Alignment ==
+
+=== MAFFT ===
+
+{{{
+#!/usr/bin/env ruby
+require 'bio'
+options = [ '--maxiterate', '1000', '--localpair' ]
+mafft = Bio::MAFFT.new('/home/zma/SOFTWARE/mafft-6.847-without-extensions/scripts/mafft', options )
+report = mafft.query_align( seqs)
+}}}
+
+
+