* `-f=<first>` : first gene tree to analyze (0-based index) (default: analyze all gene trees)
=== Options ===
* `-f=<first>` : first gene tree to analyze (0-based index) (default: analyze all gene trees)
@@ -30,8+29,8 @@ The species tree ideally is in [http://www.biomedcentral.com/1471-2105/10/356/ p
The species tree is allowed to have nodes with more than two descendants (polytomies), as long as the (slower) GSDIR ([GSDI GSDI] re-rooting) algorithm is used.
The species tree is allowed to have nodes with more than two descendants (polytomies), as long as the (slower) GSDIR ([GSDI GSDI] re-rooting) algorithm is used.
-==== Note ====
-Since the Java memory default allocation too small for even moderately large data-sets, it is necessary to increase it with the `-Xmx2048m` command line option.
+==== Note about memory ====
+Since the Java memory default allocation is too small for even moderately large data-sets, it is necessary to increase it with the `-Xmx2048m` command line option.